IL_11HV_119
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAG*CGUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HV_119 not in the Motif Atlas
- Homologous match to IL_8GLP_138
- Geometric discrepancy: 0.0593
- The information below is about IL_8GLP_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14250.3
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 11
Unit IDs
11HV|1|28|C|4243
11HV|1|28|A|4244
11HV|1|28|G|4245
*
11HV|1|28|C|4263
11HV|1|28|G|4264
11HV|1|28|U|4265
11HV|1|28|G|4266
11HV|1|28|G|4267
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 11
- 60S ribosomal protein L11
- Chain 21
- 60S ribosomal protein L21
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain L5
- 60S ribosomal protein L5
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