IL_11HV_122

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

11HV|1|28|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_122 not in the Motif Atlas

Homologous match to IL_9H3G_115

Geometric discrepancy: 0.1985

The information below is about IL_9H3G_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57267.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

11HV|1|28|G|4347
11HV|1|28|A|4348
11HV|1|28|C|4349
11HV|1|28|C|4350
*
11HV|1|28|G|4364
11HV|1|28|C|4365

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 13

Large ribosomal subunit protein eL13

Chain 42

eL42

Chain Q

Large ribosomal subunit protein eL18

Chain dd

60S ribosomal protein L27a