IL_11IQ_033

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

11IQ|1|18|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_033 not in the Motif Atlas

Homologous match to IL_9PN5_174

Geometric discrepancy: 0.0988

The information below is about IL_9PN5_174

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.3

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

6

Unit IDs

11IQ|1|18|G|665
11IQ|1|18|U|666
11IQ|1|18|U|667
11IQ|1|18|A|668
11IQ|1|18|A|669
11IQ|1|18|A|670
11IQ|1|18|A|671
*
11IQ|1|18|U|1161
11IQ|1|18|C|1162

Current chains

Chain 18

18S rRNA

Nearby chains

Chain RR

40S ribosomal protein S23

Chain S2

40S ribosomal protein S2

Chain UU

eS26