IL_11IQ_035

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_035 not in the Motif Atlas

Homologous match to IL_9PN5_176

Geometric discrepancy: 0.1088

The information below is about IL_9PN5_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

11IQ|1|18|C|676
11IQ|1|18|G|677
11IQ|1|18|U|678
11IQ|1|18|A|679
11IQ|1|18|G|680
*
11IQ|1|18|U|1025
11IQ|1|18|C|1026
11IQ|1|18|A|1027
11IQ|1|18|A|1028
11IQ|1|18|G|1029

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain DD

Small ribosomal subunit protein uS17

Chain FF

40S ribosomal protein S13

Chain QQ

40S ribosomal protein S15a

Chain RR

40S ribosomal protein S23