IL_11IQ_036

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_036 not in the Motif Atlas

Homologous match to IL_9PN5_178

Geometric discrepancy: 0.1601

The information below is about IL_9PN5_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.4

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

25

Unit IDs

11IQ|1|18|A|802
11IQ|1|18|C|803
*
11IQ|1|18|G|860
11IQ|1|18|A|861
11IQ|1|18|A|862
11IQ|1|18|U|863

Current chains

Chain 18

18S rRNA

Nearby chains

Chain DD

Small ribosomal subunit protein uS17

Chain QQ

40S ribosomal protein S15a

Chain RR

40S ribosomal protein S23

Chain S7

Small ribosomal subunit protein eS7