IL_11IQ_086

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_086 not in the Motif Atlas

Homologous match to IL_9H3G_241

Geometric discrepancy: 0.1217

The information below is about IL_9H3G_241

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

11IQ|1|18|U|1733
11IQ|1|18|G|1734
11IQ|1|18|A|1735
11IQ|1|18|G|1736
*
11IQ|1|18|C|1798
11IQ|1|18|G|1799
11IQ|1|18|A|1800
11IQ|1|18|A|1801

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL14

Chain 24

Large ribosomal subunit protein eL24

Chain S6

40S ribosomal protein S6

Chain S8

40S ribosomal protein S8