IL_11IQ_163

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

11IQ|1|28|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_163 not in the Motif Atlas

Homologous match to IL_8GLP_082

Geometric discrepancy: 0.2192

The information below is about IL_8GLP_082

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.4

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

5

Unit IDs

11IQ|1|28|U|1957
11IQ|1|28|A|1958
11IQ|1|28|U|1959
11IQ|1|28|A|1960
11IQ|1|28|G|1961
11IQ|1|28|A|1962
11IQ|1|28|C|1963
11IQ|1|28|A|1964
11IQ|1|28|G|1965
*
11IQ|1|28|C|2022
11IQ|1|28|C|2023
11IQ|1|28|G|2024
11IQ|1|28|A|2025
11IQ|1|28|A|2026

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 40

Large ribosomal subunit protein eL40

Chain s

60S acidic ribosomal protein P0