IL_11IQ_170

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

11IQ|1|28|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_170 not in the Motif Atlas

Homologous match to IL_8GLP_087

Geometric discrepancy: 0.0636

The information below is about IL_8GLP_087

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

11IQ|1|28|U|2312
11IQ|1|28|A|2313
11IQ|1|28|G|2314
*
11IQ|1|28|C|2325
11IQ|1|28|G|2326

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 32

Large ribosomal subunit protein eL32

Chain 58

5.8S ribosomal RNA; 5.8S rRNA

Chain gg

60S ribosomal protein L28