IL_11IQ_171
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11IQ_171 not in the Motif Atlas
- Homologous match to IL_8GLP_300
- Geometric discrepancy: 0.0468
- The information below is about IL_8GLP_300
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
11IQ|1|28|G|2358
11IQ|1|28|U|2359
11IQ|1|28|A|2360
11IQ|1|28|G|2361
11IQ|1|28|U|2362
11IQ|1|28|A|2363
11IQ|1|28|G|2364
*
11IQ|1|28|C|3858
11IQ|1|28|G|3859
11IQ|1|28|A|3860
11IQ|1|28|A|3861
11IQ|1|28|A|3862
11IQ|1|28|C|3863
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 17
- Large ribosomal subunit protein uL22
- Chain L4
- 60S ribosomal protein L4
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