IL_11IQ_184

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_184 not in the Motif Atlas

Homologous match to IL_9PN5_072

Geometric discrepancy: 0.0955

The information below is about IL_9PN5_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.3

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

8

Unit IDs

11IQ|1|28|A|2832
11IQ|1|28|A|2833
11IQ|1|28|C|2834
11IQ|1|28|A|2835
11IQ|1|28|A|2836
11IQ|1|28|U|2837
11IQ|1|28|G|2838
*
11IQ|1|28|C|3850
11IQ|1|28|U|3851
11IQ|1|28|A|3852
11IQ|1|28|U|3853

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 17

Large ribosomal subunit protein uL22

Chain 31

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3