IL_11IQ_186

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_186 not in the Motif Atlas

Geometric match to IL_8GLP_304

Geometric discrepancy: 0.0669

The information below is about IL_8GLP_304

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.4

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

11IQ|1|28|G|2847
11IQ|1|28|G|2848
11IQ|1|28|A|2849
11IQ|1|28|A|2850
*
11IQ|1|28|U|3840
11IQ|1|28|C|3841

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL14

Chain L3

60S ribosomal protein L3