IL_11IQ_218

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

11IQ|1|28|A|4518, 11IQ|1|28|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_218 not in the Motif Atlas

Homologous match to IL_8GLP_148

Geometric discrepancy: 0.0875

The information below is about IL_8GLP_148

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.4

Basepair signature

cWW-cWW

Number of instances in this motif group

22

Unit IDs

11IQ|1|28|C|4458
11IQ|1|28|U|4459
*
11IQ|1|28|A|4517
11IQ|1|28|A|4518
11IQ|1|28|C|4519
11IQ|1|28|G|4520

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL14

Chain L3

60S ribosomal protein L3

Chain bb

Large ribosomal subunit protein uL13