IL_11IQ_225

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

11IQ|1|28|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_225 not in the Motif Atlas

Homologous match to IL_8GLP_158

Geometric discrepancy: 0.1162

The information below is about IL_8GLP_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46211.1

Basepair signature

cWW-tWW-tHS-cWW

Number of instances in this motif group

2

Unit IDs

11IQ|1|28|C|4582
11IQ|1|28|C|4583
11IQ|1|28|A|4584
11IQ|1|28|U|4585
*
11IQ|1|28|A|4717
11IQ|1|28|G|4718
11IQ|1|28|G|4719
11IQ|1|28|C|4720
11IQ|1|28|G|4721

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain bb

Large ribosomal subunit protein uL13