IL_11IQ_231

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

11IQ|1|28|A|4656, 11IQ|1|28|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_231 not in the Motif Atlas

Homologous match to IL_8GLP_163

Geometric discrepancy: 0.0471

The information below is about IL_8GLP_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.4

Basepair signature

cWW-cWW

Number of instances in this motif group

22

Unit IDs

11IQ|1|28|U|4641
11IQ|1|28|U|4642
*
11IQ|1|28|A|4655
11IQ|1|28|A|4656
11IQ|1|28|U|4657
11IQ|1|28|G|4658

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 19

60S ribosomal protein L19

Chain 31

60S ribosomal protein L31