IL_11JJ_007

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUU*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_007 not in the Motif Atlas

Geometric match to IL_8OI5_037

Geometric discrepancy: 0.1595

The information below is about IL_8OI5_037

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

11JJ|1|18|G|108
11JJ|1|18|U|109
11JJ|1|18|U|110
*
11JJ|1|18|G|351
11JJ|1|18|U|352
11JJ|1|18|C|353

Current chains

Chain 18

18S rRNA

Nearby chains

Chain DD

Small ribosomal subunit protein uS17

Chain S4

40S ribosomal protein S4

Chain S8

40S ribosomal protein S8