IL_11JJ_011
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 11JJ|1|18|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_011 not in the Motif Atlas
- Homologous match to IL_9H3G_165
- Geometric discrepancy: 0.154
- The information below is about IL_9H3G_165
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_24485.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 4
Unit IDs
11JJ|1|18|G|145
11JJ|1|18|G|146
11JJ|1|18|A|147
11JJ|1|18|U|148
11JJ|1|18|A|149
11JJ|1|18|A|150
11JJ|1|18|C|151
*
11JJ|1|18|G|167
11JJ|1|18|C|168
11JJ|1|18|U|169
11JJ|1|18|A|170
11JJ|1|18|A|171
11JJ|1|18|U|172
11JJ|1|18|A|173
11JJ|1|18|C|174
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain S6
- 40S ribosomal protein S6
- Chain SS
- 40S ribosomal protein S24
- Chain W
- Ribosomal protein L24
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