IL_11JJ_013

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_013 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.3123

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

11JJ|1|18|C|188
11JJ|1|18|U|189
11JJ|1|18|G|190
11JJ|1|18|A|191
11JJ|1|18|C|192
*
11JJ|1|18|G|207
11JJ|1|18|G|208
11JJ|1|18|A|209
11JJ|1|18|U|210
11JJ|1|18|G|211

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S8

40S ribosomal protein S8