IL_11JJ_018
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 11JJ|1|18|U|361, 11JJ|1|18|C|399, 11JJ|1|18|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_018 not in the Motif Atlas
- Homologous match to IL_9PN5_159
- Geometric discrepancy: 0.1237
- The information below is about IL_9PN5_159
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.6
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
11JJ|1|18|U|359
11JJ|1|18|A|360
11JJ|1|18|U|361
11JJ|1|18|C|362
11JJ|1|18|A|363
11JJ|1|18|A|364
*
11JJ|1|18|U|396
11JJ|1|18|G|397
11JJ|1|18|A|398
11JJ|1|18|C|399
11JJ|1|18|C|400
11JJ|1|18|A|401
11JJ|1|18|C|402
11JJ|1|18|G|403
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
- Chain DD
- Small ribosomal subunit protein uS17
- Chain RR
- 40S ribosomal protein S23
- Chain S8
- 40S ribosomal protein S8
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