IL_11JJ_026

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

11JJ|1|18|A|628

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_026 not in the Motif Atlas

Homologous match to IL_9H3G_187

Geometric discrepancy: 0.1856

The information below is about IL_9H3G_187

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

11JJ|1|18|G|611
11JJ|1|18|U|612
11JJ|1|18|G|613
11JJ|1|18|C|614
11JJ|1|18|C|615
11JJ|1|18|A|616
11JJ|1|18|G|617
*
11JJ|1|18|C|624
11JJ|1|18|G|625
11JJ|1|18|G|626
11JJ|1|18|U|627
11JJ|1|18|A|628
11JJ|1|18|A|629
11JJ|1|18|U|630
11JJ|1|18|U|631
11JJ|1|18|C|632

Current chains

Chain 18

18S rRNA

Nearby chains

Chain LA

LARP1

Chain RR

40S ribosomal protein S23

Chain S3

Small ribosomal subunit protein uS3

Chain YY

40S ribosomal protein S30

Chain v

Elongation factor 2