IL_11JJ_031

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_031 not in the Motif Atlas

Geometric match to IL_4V83_235

Geometric discrepancy: 0.2321

The information below is about IL_4V83_235

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01334.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

23

Unit IDs

11JJ|1|18|G|692
11JJ|1|18|A|693
11JJ|1|18|G|694
*
11JJ|1|18|U|732
11JJ|1|18|C|733
11JJ|1|18|C|734

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S7

Small ribosomal subunit protein eS7

Chain WX

40S ribosomal protein S15a