IL_11JJ_044

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

11JJ|1|18|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_044 not in the Motif Atlas

Homologous match to IL_9H3G_202

Geometric discrepancy: 0.2154

The information below is about IL_9H3G_202

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

11JJ|1|18|G|952
11JJ|1|18|C|953
11JJ|1|18|U|954
11JJ|1|18|A|955
11JJ|1|18|G|956
*
11JJ|1|18|C|967
11JJ|1|18|U|968
11JJ|1|18|U|969
11JJ|1|18|G|970
11JJ|1|18|G|971
11JJ|1|18|A|972
11JJ|1|18|C|973
11JJ|1|18|C|974

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain AS

40S ribosomal protein S3a

Chain GG

Small ribosomal subunit protein uS11

Chain IF

IFRD2