IL_11JJ_046

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_046 not in the Motif Atlas

Homologous match to IL_9H3G_204

Geometric discrepancy: 0.0994

The information below is about IL_9H3G_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.4

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

21

Unit IDs

11JJ|1|18|C|1047
11JJ|1|18|G|1048
11JJ|1|18|A|1049
11JJ|1|18|A|1050
11JJ|1|18|G|1051
*
11JJ|1|18|C|1067
11JJ|1|18|G|1068
11JJ|1|18|U|1069
11JJ|1|18|A|1070
11JJ|1|18|G|1071

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain GG

Small ribosomal subunit protein uS11

Chain IF

IFRD2

Chain L8

60S ribosomal protein L8

Chain UU

eS26