IL_11JJ_061
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 11JJ|1|18|U|1494, 11JJ|1|18|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_061 not in the Motif Atlas
- Homologous match to IL_9H3G_221
- Geometric discrepancy: 0.1287
- The information below is about IL_9H3G_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09439.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
11JJ|1|18|U|1333
11JJ|1|18|G|1334
11JJ|1|18|G|1335
*
11JJ|1|18|U|1492
11JJ|1|18|C|1493
11JJ|1|18|U|1494
11JJ|1|18|G|1495
11JJ|1|18|U|1496
11JJ|1|18|G|1497
11JJ|1|18|A|1498
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain CC
- 40S ribosomal protein S10
- Chain OO
- 40S ribosomal protein S20
- Chain S3
- Small ribosomal subunit protein uS3
- Chain XX
- 40S ribosomal protein S29
Coloring options: