IL_11JJ_077

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

11JJ|1|18|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_077 not in the Motif Atlas

Homologous match to IL_9PN5_226

Geometric discrepancy: 0.0997

The information below is about IL_9PN5_226

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

11JJ|1|18|U|1720
11JJ|1|18|U|1721
11JJ|1|18|G|1722
*
11JJ|1|18|U|1812
11JJ|1|18|A|1813

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL14

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain 41

eL41

Chain RR

40S ribosomal protein S23