IL_11JJ_093
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 11JJ|1|28|C|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_093 not in the Motif Atlas
- Homologous match to IL_8GLP_009
- Geometric discrepancy: 0.2751
- The information below is about IL_8GLP_009
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 67
Unit IDs
11JJ|1|28|C|125
11JJ|1|28|C|126
*
11JJ|1|28|G|142
11JJ|1|28|C|143
11JJ|1|28|G|144
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 15
- 60S ribosomal protein L15
- Chain 35
- 60S ribosomal protein L35
- Chain 58
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain aa
- Large ribosomal subunit protein eL8
- Chain cc
- Large ribosomal subunit protein uL23
Coloring options: