IL_11JJ_120
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 11JJ|1|28|G|748, 11JJ|1|28|U|914, 11JJ|1|28|C|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_120 not in the Motif Atlas
- Geometric match to IL_8GLP_040
- Geometric discrepancy: 0.2171
- The information below is about IL_8GLP_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25001.2
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
11JJ|1|28|G|745
11JJ|1|28|A|746
11JJ|1|28|A|747
11JJ|1|28|G|748
11JJ|1|28|G|749
11JJ|1|28|U|750
11JJ|1|28|G|751
11JJ|1|28|G|752
*
11JJ|1|28|U|911
11JJ|1|28|G|912
11JJ|1|28|U|913
11JJ|1|28|U|914
11JJ|1|28|A|915
11JJ|1|28|C|916
11JJ|1|28|A|917
11JJ|1|28|G|918
11JJ|1|28|C|919
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 14
- 60S ribosomal protein L14
- Chain 20
- Large ribosomal subunit protein eL20
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