IL_11JJ_141

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_141 not in the Motif Atlas

Homologous match to IL_9H3G_040

Geometric discrepancy: 0.095

The information below is about IL_9H3G_040

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

11JJ|1|28|U|1671
11JJ|1|28|U|1672
11JJ|1|28|U|1673
*
11JJ|1|28|A|1682
11JJ|1|28|U|1683
11JJ|1|28|A|1684

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 13

Large ribosomal subunit protein eL13

Chain 21

60S ribosomal protein L21

Chain 29

Large ribosomal subunit protein eL29

Chain Q

Large ribosomal subunit protein eL18

Chain dd

60S ribosomal protein L27a