IL_11JJ_161
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 11JJ|1|28|A|1960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_161 not in the Motif Atlas
- Homologous match to IL_8GLP_082
- Geometric discrepancy: 0.2629
- The information below is about IL_8GLP_082
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.4
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 5
Unit IDs
11JJ|1|28|U|1957
11JJ|1|28|A|1958
11JJ|1|28|U|1959
11JJ|1|28|A|1960
11JJ|1|28|G|1961
11JJ|1|28|A|1962
11JJ|1|28|C|1963
11JJ|1|28|A|1964
11JJ|1|28|G|1965
*
11JJ|1|28|C|2022
11JJ|1|28|C|2023
11JJ|1|28|G|2024
11JJ|1|28|A|2025
11JJ|1|28|A|2026
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 40
- Large ribosomal subunit protein eL40
- Chain s
- 60S acidic ribosomal protein P0
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