IL_11JJ_162

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

11JJ|1|28|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_162 not in the Motif Atlas

Homologous match to IL_9AXU_052

Geometric discrepancy: 0.4595

The information below is about IL_9AXU_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11JJ|1|28|G|1973
11JJ|1|28|U|1974
11JJ|1|28|G|1975
11JJ|1|28|G|1976
11JJ|1|28|C|1977
*
11JJ|1|28|G|1989
11JJ|1|28|A|1990
11JJ|1|28|A|1991
11JJ|1|28|U|1992
11JJ|1|28|C|1993

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain s

60S acidic ribosomal protein P0

Chain t

uL11