IL_9AXU_052

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

9AXU|1|2|G|1267

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AXU_052 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.3295

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9AXU|1|2|G|1265
9AXU|1|2|U|1266
9AXU|1|2|G|1267
9AXU|1|2|G|1268
9AXU|1|2|C|1269
*
9AXU|1|2|G|1281
9AXU|1|2|A|1282
9AXU|1|2|A|1283
9AXU|1|2|U|1284
9AXU|1|2|C|1285

Current chains

Chain 2

28S ribosomal RNA

Nearby chains