IL_11JJ_169

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_169 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.0672

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

11JJ|1|28|G|2358
11JJ|1|28|U|2359
11JJ|1|28|A|2360
11JJ|1|28|G|2361
11JJ|1|28|U|2362
11JJ|1|28|A|2363
11JJ|1|28|G|2364
*
11JJ|1|28|C|3858
11JJ|1|28|G|3859
11JJ|1|28|A|3860
11JJ|1|28|A|3861
11JJ|1|28|A|3862
11JJ|1|28|C|3863

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 17

60S ribosomal protein L17

Chain L4

60S ribosomal protein L4