IL_11JJ_172

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_172 not in the Motif Atlas

Homologous match to IL_8GLP_092

Geometric discrepancy: 0.5576

The information below is about IL_8GLP_092

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

11JJ|1|28|A|2477
11JJ|1|28|C|2478
11JJ|1|28|G|2479
*
11JJ|1|28|C|2499
11JJ|1|28|U|2500

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 58

5.8S ribosomal RNA; 5.8S rRNA

Chain cc

Large ribosomal subunit protein uL23