IL_11JJ_177

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

11JJ|1|28|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_177 not in the Motif Atlas

Homologous match to IL_8GLP_099

Geometric discrepancy: 0.2464

The information below is about IL_8GLP_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.5

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

11JJ|1|28|C|2646
11JJ|1|28|A|2647
11JJ|1|28|G|2648
*
11JJ|1|28|C|2685
11JJ|1|28|G|2686
11JJ|1|28|U|2687
11JJ|1|28|G|2688

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 34

60S ribosomal protein L34