IL_11JJ_186

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

11JJ|1|28|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_186 not in the Motif Atlas

Homologous match to IL_8GLP_108

Geometric discrepancy: 0.0683

The information below is about IL_8GLP_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.3

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

11JJ|1|28|C|2867
11JJ|1|28|G|2868
11JJ|1|28|U|2869
11JJ|1|28|A|2870
11JJ|1|28|A|2871
11JJ|1|28|C|2872
*
11JJ|1|28|G|2877
11JJ|1|28|G|2878
11JJ|1|28|A|2879
11JJ|1|28|U|2880
11JJ|1|28|A|2881
11JJ|1|28|A|2882
11JJ|1|28|G|2883

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain 41

eL41

Chain ff

60S ribosomal protein L37a