IL_11JJ_194

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_194 not in the Motif Atlas

Homologous match to IL_9H3G_097

Geometric discrepancy: 0.1386

The information below is about IL_9H3G_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.4

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

11JJ|1|28|U|3715
11JJ|1|28|C|3716
11JJ|1|28|A|3717
11JJ|1|28|A|3718
11JJ|1|28|A|3719
11JJ|1|28|G|3720
11JJ|1|28|U|3721
*
11JJ|1|28|A|3732
11JJ|1|28|A|3733
11JJ|1|28|U|3734
11JJ|1|28|G|3735
11JJ|1|28|A|3736
11JJ|1|28|A|3737
11JJ|1|28|G|3738

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 36

60S ribosomal protein L36

Chain 42

eL42

Chain L8

60S ribosomal protein L8