IL_11JJ_251

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACGAG*CGACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_251 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.3078

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.5

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

11JJ|1|ES|A|2952
11JJ|1|ES|C|2953
11JJ|1|ES|G|2954
11JJ|1|ES|A|2955
11JJ|1|ES|G|2956
*
11JJ|1|ES|C|3238
11JJ|1|ES|G|3239
11JJ|1|ES|A|3240
11JJ|1|ES|C|3241
11JJ|1|ES|U|3242

Current chains

Chain ES

ES27L

Nearby chains

Chain F

Proliferation-associated protein 2G4