IL_11KH_060
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 11KH|1|18|G|1285, 11KH|1|18|U|1314, 11KH|1|18|U|1315
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_060 not in the Motif Atlas
- Homologous match to IL_9H3G_216
- Geometric discrepancy: 0.2485
- The information below is about IL_9H3G_216
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06668.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
11KH|1|18|G|1281
11KH|1|18|A|1282
11KH|1|18|C|1283
11KH|1|18|A|1284
11KH|1|18|G|1285
11KH|1|18|G|1286
11KH|1|18|A|1287
11KH|1|18|U|1288
11KH|1|18|U|1289
11KH|1|18|G|1290
*
11KH|1|18|C|1309
11KH|1|18|U|1310
11KH|1|18|C|1311
11KH|1|18|G|1312
11KH|1|18|A|1313
11KH|1|18|U|1314
11KH|1|18|U|1315
11KH|1|18|C|1316
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain CC
- 40S ribosomal protein S10
- Chain EE
- 40S ribosomal protein S12
- Chain XX
- 40S ribosomal protein S29
- Chain ZZ
- 40S ribosomal protein S27a
Coloring options: