IL_11KH_189

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

11KH|1|28|C|3701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_189 not in the Motif Atlas

Homologous match to IL_8GLP_116

Geometric discrepancy: 0.0689

The information below is about IL_8GLP_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55206.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

11KH|1|28|C|3700
11KH|1|28|C|3701
11KH|1|28|A|3702
11KH|1|28|G|3703
*
11KH|1|28|C|3749
11KH|1|28|G|3750

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain IF

IFRD2

Chain L8

60S ribosomal protein L8