IL_12DP_009

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

12DP|1|1A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_009 not in the Motif Atlas

Geometric match to IL_9DFE_009

Geometric discrepancy: 0.094

The information below is about IL_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

12DP|1|1A|C|280
12DP|1|1A|G|281
12DP|1|1A|A|282
12DP|1|1A|A|283
12DP|1|1A|U|284
*
12DP|1|1A|A|357
12DP|1|1A|U|358
12DP|1|1A|A|359
12DP|1|1A|G|360

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains