IL_9DFE_009

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

9DFE|1|1A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9DFE|1|1A|C|280
9DFE|1|1A|G|281
9DFE|1|1A|A|282
9DFE|1|1A|A|283
9DFE|1|1A|U|284
*
9DFE|1|1A|A|357
9DFE|1|1A|U|358
9DFE|1|1A|A|359
9DFE|1|1A|G|360

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains