IL_12DP_162

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_162 not in the Motif Atlas

Homologous match to IL_8B0X_056

Geometric discrepancy: 0.0847

The information below is about IL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28265.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

9

Unit IDs

12DP|1|1a|C|1303
12DP|1|1a|G|1304
12DP|1|1a|G|1305
12DP|1|1a|A|1306
12DP|1|1a|U|1307
12DP|1|1a|U|1308
*
12DP|1|1a|A|1329
12DP|1|1a|U|1330
12DP|1|1a|G|1331
12DP|1|1a|A|1332
12DP|1|1a|A|1333
12DP|1|1a|G|1334

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1u

30S ribosomal protein Thx