IL_12DQ_276

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

12DQ|1|2A|U|2689, 12DQ|1|2A|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_276 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.1563

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

12DQ|1|2A|U|2687
12DQ|1|2A|U|2688
12DQ|1|2A|U|2689
12DQ|1|2A|C|2690
12DQ|1|2A|C|2691
*
12DQ|1|2A|G|2718
12DQ|1|2A|G|2719
12DQ|1|2A|U|2720
12DQ|1|2A|A|2721
12DQ|1|2A|G|2722

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19