IL_1AQO_033

3D structure

PDB id

1AQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRON RESPONSIVE ELEMENT RNA HAIRPIN, NMR, 15 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UCA*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1AQO_033 not in the Motif Atlas

Geometric match to IL_7A0S_078

Geometric discrepancy: 0.2042

The information below is about IL_7A0S_078

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

1AQO|13|A|U|9
1AQO|13|A|C|10
1AQO|13|A|A|11
*
1AQO|13|A|U|20
1AQO|13|A|G|21
1AQO|13|A|G|22

Current chains

Chain A

IRON RESPONSIVE ELEMENT RNA HAIRPIN

Nearby chains