IL_1ARJ_025

3D structure

PDB id

1ARJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARG-BOUND TAR RNA, NMR

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AUCUG*CU

Length

7 nucleotides

Bulged bases

1ARJ|20|N|C|24

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1ARJ_025 not in the Motif Atlas

Geometric match to IL_6JQ6_004

Geometric discrepancy: 0.3717

The information below is about IL_6JQ6_004

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

1ARJ|20|N|A|22
1ARJ|20|N|U|23
1ARJ|20|N|C|24
1ARJ|20|N|U|25
1ARJ|20|N|G|26
*
1ARJ|20|N|C|39
1ARJ|20|N|U|40

Current chains

Chain N

TAR RNA

Nearby chains