1ARJ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1ARJ_001 | 1/N/29:36 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_1ARJ_002 | 2/N/29:36 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_1ARJ_003 | 3/N/29:36 | No text annotation | geometric HL_4V88_198 NA | |
| HL_1ARJ_004 | 4/N/29:36 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_1ARJ_005 | 5/N/29:36 | No text annotation | ||
| HL_1ARJ_006 | 6/N/29:36 | No text annotation | ||
| HL_1ARJ_007 | 7/N/29:36 | No text annotation | ||
| HL_1ARJ_008 | 8/N/29:36 | No text annotation | ||
| HL_1ARJ_009 | 9/N/29:36 | No text annotation | ||
| HL_1ARJ_023 | 10/N/28:37 | No text annotation | ||
| HL_1ARJ_011 | 11/N/29:36 | No text annotation | geometric HL_4WF9_009 HL_81100.2 | |
| HL_1ARJ_024 | 12/N/29:36 | No text annotation | ||
| HL_1ARJ_013 | 13/N/29:36 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_1ARJ_022 | 14/N/29:36 | No text annotation | ||
| HL_1ARJ_014 | 14/N/30:34 | No text annotation | ||
| HL_1ARJ_015 | 15/N/29:36 | No text annotation | ||
| HL_1ARJ_016 | 16/N/29:36 | No text annotation | ||
| HL_1ARJ_017 | 17/N/29:36 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_1ARJ_018 | 18/N/29:36 | No text annotation | ||
| HL_1ARJ_019 | 19/N/29:36 | No text annotation | ||
| HL_1ARJ_020 | 20/N/29:34 | No text annotation | geometric HL_4WF9_003 HL_75660.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1ARJ_021 | No text annotation | ||
| HL_1ARJ_010 | No text annotation | ||
| HL_1ARJ_012 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1ARJ_001 | 1/N/22:26, 1/N/39:40 | Multiple bulged bases | geometric IL_5W1H_001 IL_82107.5 | |
| IL_1ARJ_003 | 2/N/22:26, 2/N/39:40 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.5 | |
| IL_1ARJ_027 | 3/N/22:26, 3/N/39:40 | Multiple bulged bases | geometric IL_8C3A_090 NA | |
| IL_1ARJ_006 | 4/N/22:26, 4/N/39:40 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_1ARJ_007 | 5/N/22:26, 5/N/39:40 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.5 | |
| IL_1ARJ_036 | 6/N/22:26, 6/N/39:40 | Multiple bulged bases | geometric IL_4V9F_021 IL_82107.5 | |
| IL_1ARJ_009 | 7/N/22:26, 7/N/39:40 | Multiple bulged bases | geometric IL_4V9F_021 IL_82107.5 | |
| IL_1ARJ_031 | 8/N/22:26, 8/N/39:40 | Multiple bulged bases | geometric IL_5W1H_001 IL_82107.5 | |
| IL_1ARJ_011 | 9/N/22:26, 9/N/39:40 | Multiple bulged bases | geometric IL_5W1H_001 IL_82107.5 | |
| IL_1ARJ_012 | 10/N/22:26, 10/N/39:40 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.5 | |
| IL_1ARJ_032 | 11/N/22:27, 11/N/38:40 | No text annotation | ||
| IL_1ARJ_014 | 12/N/22:26, 12/N/39:40 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.5 | |
| IL_1ARJ_037 | 13/N/22:26, 13/N/39:40 | No text annotation | geometric IL_8CRE_090 IL_82107.5 | |
| IL_1ARJ_017 | 14/N/22:26, 14/N/39:40 | Multiple bulged bases | geometric IL_5W1H_001 IL_82107.5 | |
| IL_1ARJ_018 | 14/N/29:30, 14/N/34:36 | No text annotation | ||
| IL_1ARJ_019 | 15/N/22:26, 15/N/39:40 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.5 | |
| IL_1ARJ_038 | 16/N/22:26, 16/N/39:40 | No text annotation | geometric IL_8CRE_398 IL_82107.5 | |
| IL_1ARJ_022 | 17/N/22:26, 17/N/39:40 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.5 | |
| IL_1ARJ_023 | 18/N/22:26, 18/N/39:40 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.5 | |
| IL_1ARJ_024 | 19/N/22:26, 19/N/39:40 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_1ARJ_025 | 20/N/22:26, 20/N/39:40 | Stack outside cWW | geometric IL_6JQ6_004 IL_66635.5 | |
| IL_1ARJ_026 | 20/N/27:29, 20/N/34:38 | Isolated non-canonical cWW pair | geometric IL_7A0S_038 IL_57744.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1ARJ_002 | Isolated non-canonical cWW pair | ||
| IL_1ARJ_004 | Isolated non-canonical cWW with bulges | ||
| IL_1ARJ_005 | No text annotation | ||
| IL_1ARJ_028 | Isolated non-canonical cWW with bulges | ||
| IL_1ARJ_029 | Isolated non-canonical cWW pair | ||
| IL_1ARJ_008 | Tandem non-canonical cWW pairs | ||
| IL_1ARJ_030 | Isolated non-canonical cWW with bulges | ||
| IL_1ARJ_010 | Isolated non-canonical cWW with bulges | ||
| IL_1ARJ_013 | No text annotation | ||
| IL_1ARJ_015 | Isolated non-canonical cWW pair | ||
| IL_1ARJ_016 | No text annotation | ||
| IL_1ARJ_020 | Isolated non-canonical cWW pair | ||
| IL_1ARJ_021 | Isolated non-canonical cWW pair | ||
| IL_1ARJ_033 | Isolated non-canonical cWW with bulges | ||
| IL_1ARJ_034 | Isolated non-canonical cWW with bulges | ||
| IL_1ARJ_035 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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