IL_1ARJ_026

3D structure

PDB id

1ARJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARG-BOUND TAR RNA, NMR

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AGC*GAGCU

Length

8 nucleotides

Bulged bases

1ARJ|20|N|A|35

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1ARJ_026 not in the Motif Atlas

Geometric match to IL_7A0S_038

Geometric discrepancy: 0.3787

The information below is about IL_7A0S_038

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

1ARJ|20|N|A|27
1ARJ|20|N|G|28
1ARJ|20|N|C|29
*
1ARJ|20|N|G|34
1ARJ|20|N|A|35
1ARJ|20|N|G|36
1ARJ|20|N|C|37
1ARJ|20|N|U|38

Current chains

Chain N

TAR RNA

Nearby chains