IL_1BVJ_017

3D structure

PDB id

1BVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

HIV-1 RNA A-RICH HAIRPIN LOOP

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

1BVJ|17|A|C|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1BVJ_017 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.245

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

1BVJ|17|A|A|5
1BVJ|17|A|C|6
1BVJ|17|A|G|7
*
1BVJ|17|A|C|18
1BVJ|17|A|U|19

Current chains

Chain A

RNA (5'-R(P*GP*GP*CP*GP*AP*CP*GP*GP*UP*GP*UP*AP*AP*AP*AP*AP*UP*CP*UP*CP*GP*CP* C)-3')

Nearby chains