IL_1D0T_004

3D structure

PDB id

1D0T (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF A PHOSPHOROTHIOATE MODIFIED RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

G(SRA)UC*G(SRA)UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1D0T_004 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2218

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

1D0T|4|A|G|3
1D0T|4|A|SRA|4
1D0T|4|A|U|5
1D0T|4|A|C|6
*
1D0T|4|A|G|16
1D0T|4|A|SRA|17
1D0T|4|A|U|18
1D0T|4|A|C|19

Current chains

Chain A

PHOSPHOROTHIOATE SUBSTITUTED PHAGE MS2 RNA BINDING SITE

Nearby chains