1D0T Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1D0T_001 | 1/A/9:14 | No text annotation | geometric HL_5AMQ_001 HL_89167.3 | |
| HL_1D0T_002 | 2/A/9:14 | No text annotation | geometric HL_4LFB_004 HL_89167.3 | |
| HL_1D0T_003 | 3/A/9:14 | No text annotation | geometric HL_5AMQ_001 HL_89167.3 | |
| HL_1D0T_004 | 4/A/9:14 | No text annotation | geometric HL_6DTD_001 HL_89167.3 | |
| HL_1D0T_005 | 5/A/9:14 | No text annotation | geometric HL_5AMQ_001 HL_89167.3 | |
| HL_1D0T_006 | 6/A/9:14 | No text annotation | geometric HL_2ZNI_001 HL_75660.9 | |
| HL_1D0T_007 | 7/A/9:14 | No text annotation | geometric HL_2Y9H_003 HL_75660.9 | |
| HL_1D0T_008 | 8/A/9:14 | No text annotation | geometric HL_6DTD_001 HL_89167.3 | |
| HL_1D0T_009 | 9/A/9:14 | No text annotation | geometric HL_6D12_002 HL_89167.3 | |
| HL_1D0T_010 | 10/A/9:14 | No text annotation | geometric HL_5AMQ_001 HL_89167.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1D0T_011 | 1/A/6:8, 1/A/15:16 | Major groove platform | geometric IL_1G1X_002 NA | |
| IL_1D0T_012 | 2/A/6:8, 2/A/15:16 | Multiple bulged bases | geometric IL_7OS0_002 IL_71421.4 | |
| IL_1D0T_013 | 3/A/6:8, 3/A/15:16 | Major groove platform | geometric IL_4LFB_028 IL_48076.9 | |
| IL_1D0T_014 | 4/A/6:8, 4/A/15:16 | Major groove platform | geometric IL_1G1X_002 NA | |
| IL_1D0T_015 | 5/A/6:8, 5/A/15:16 | Multiple bulged bases | geometric IL_7OS0_002 IL_71421.4 | |
| IL_1D0T_016 | 6/A/6:8, 6/A/15:16 | Multiple bulged bases | geometric IL_7OS0_002 IL_71421.4 | |
| IL_1D0T_017 | 7/A/6:8, 7/A/15:16 | Major groove platform | geometric IL_7EOG_001 IL_48076.9 | |
| IL_1D0T_018 | 8/A/6:8, 8/A/15:16 | Multiple bulged bases | geometric IL_7OS0_002 IL_71421.4 | |
| IL_1D0T_019 | 9/A/6:8, 9/A/15:16 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_1D0T_020 | 10/A/6:8, 10/A/15:16 | Major groove platform | geometric IL_1G1X_005 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1D0T_001 | Tandem non-canonical cWW pairs | ||
| IL_1D0T_002 | Tandem non-canonical cWW pairs | ||
| IL_1D0T_003 | Tandem non-canonical cWW pairs | ||
| IL_1D0T_004 | Tandem non-canonical cWW pairs | ||
| IL_1D0T_005 | Tandem non-canonical cWW pairs | ||
| IL_1D0T_006 | Tandem non-canonical cWW pairs | ||
| IL_1D0T_007 | Tandem non-canonical cWW pairs | ||
| IL_1D0T_008 | Tandem non-canonical cWW pairs | ||
| IL_1D0T_009 | No text annotation | ||
| IL_1D0T_010 | Tandem non-canonical cWW pairs |
Valid loops
No loops found
Problematic loops
No problematic loops
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