IL_1DDY_005
3D structure
- PDB id
- 1DDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGCAUAAC*GCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1DDY_005 not in the Motif Atlas
- Geometric match to IL_1ET4_001
- Geometric discrepancy: 0.0847
- The information below is about IL_1ET4_001
- Detailed Annotation
- Vitamin B12 Aptamer
- Broad Annotation
- No text annotation
- Motif group
- IL_95811.1
- Basepair signature
- cWW-L-cWW-L-cWW-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
1DDY|1|E|C|411
1DDY|1|E|G|412
1DDY|1|E|C|413
1DDY|1|E|A|414
1DDY|1|E|U|415
1DDY|1|E|A|416
1DDY|1|E|A|417
1DDY|1|E|C|418
*
1DDY|1|E|G|428
1DDY|1|E|C|429
1DDY|1|E|G|430
Current chains
- Chain E
- VITAMIN B12 BINDING RNA
Nearby chains
- Chain C
- VITAMIN B12 BINDING RNA
Coloring options: